bioinformatics portal 04-04-2014d1358
2015-06-09bioinformatics portal 04-04-2014d1358
List of bioinformatic tools and platforms
- iPlant portal 04-04-2014d1354
- -other possibly similar platforms
Distributed European Infrastructure for Supercomputing Applications (DEISA), integrating eleven European supercomputing centers
Enabling Grids for E-sciencE (EGEE)
National Research Grid Initiative (NAREGEGI) involving several supercomputer centers in Japan from 2003[8]
Open Science Grid - a distributed computing infrastructure for scientific research
Extreme Science and Engineering Discovery Environment (XSEDE) - the TeraGrid successor
- GenomeSpace
- -GenomeSpace portal 11-13-2014d1029
- -first heard about this from Josh Richer presentation about a Big Data conference 04-04-2014d1359
- DNANexus
- -first heard about this from Josh Richer presentation about a Big Data conference 04-04-2014d1359
- GenomeBridge
- -first heard about this from Josh Richer presentation about a Big Data conference 04-04-2014d1359
- Galaxy project 04-21-2014d1153
- Plasmid Construction programs
- GeneRunner (can reverse complement and translate sequences in all 6 frames)
- Chromas Lite (can look at chromatograms)
- MEGA6 (can perform alignments)
- Clustal Omega (very good alignment software; can't automatically figure out whether a sequence should be forward or reverse though)
- ApE Advanced plasmid editor (nice free simple program for annotating DNA sequences)
List of Bioinformatic Tool Websites
- NCBI
- GenomeSpace
- -GenomeSpace portal 11-13-2014d1029
- JGI (Joint Genome Institute)
- -They don't support uploading custom databases 07-01-2014d2010
- EMBL-EBI (EBI=European Bioinformatics Institute)
- cBioportal portal 11-29-2014d1333
Bioinformatics Forums
- SeqAnswers portal 06-10-2014d1446
- Biostar website
Some bioinformatics work
see also