scratch notes on analysis of wafer 152 samples

2014-08-29

 scratch notes on analysis of wafer 152 samples



11-25-13

I'd like to do a quick analysis of of the wafer 152 NSB wafer samples.


commands

java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 2\900 Scans\genepix gprs" "F532 Median" -Xmx2000

Maybe I should try running some from my own computer

java -jar "\\biofs.biodesign.asu.edu\CIM\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "\\biofs.biodesign.asu.edu\CIM\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 3\genepix gprs" "F532 Median" -Xmx2000

slide 4
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 4\genepix gprs" "F532 Median" -Xmx2000


slide 5
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 5\GPRS" "F532 Median" -Xmx2000

slide 6
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 6\GPRs" "F532 Median" -Xmx2000

slide 7
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 7\GPRs" "F532 Median" -Xmx2000


slide 8
java -jar "\\biofs.biodesign.asu.edu\CIM\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "\\biofs.biodesign.asu.edu\CIM\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 8\genepix gprs" "F532 Median" -Xmx2000
\\biofs.biodesign.asu.edu\CIM\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 8\genepix gprs

slide 8 on local shared drive
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 8\genepix gprs" "F532 Median" -Xmx2000

slide 9
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 9\GenePix GPR's" "F532 Median" -Xmx2000

slide 10
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 10\GPR" "F532 Median" -Xmx2000

slide 11
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 11\GPR's" "F532 Median" -Xmx2000


slide 12
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 12\gprs" "F532 Median" -Xmx2000

slide 13
java -jar "S:\Administration\Biostatistics\Immunosignature Entropy\Code\updated code 11-14-13\AbStatCode\AbStat111413d1633.jar" find_summary_numbers_from_folder_of_gprs "S:\Research\CIM-HealthTell\Experiments\20131011 HTChipV7P-152 Production Run - (HT-152)\Slide 12" "F532 Median" -Xmx2000


Tris-Buffered Saline and Tween 20

The deadline for the application is December 16th. An abstract, research project proposal, and an updated CV should be sent by December 1st.


Dear Kurt,
Maria Blasco told me to contact you and send you the below and attached information regarding a Postdoctoral fellowships by AXA Research Fund.
She would like that you apply to this postdoctoral fellowship, if possible.
Please confirm and if you need more information, do not hesitate to contact us.
Best regards
Susa Alcami




Slide11 RowF 123 910AL 10252013 RED _b1.gpr R5 R
Slide11 RowF 123 910AL 10252013 RED _b2.gpr L6 L
Slide11 RowF 123 910AL 10252013 RED _b3.gpr 17 U
Slide11 RowG 123 910AL 10252013 RED _b1.gpr M5 M
Slide11 RowG 123 910AL 10252013 RED _b2.gpr 10 U
Slide11 RowG 123 910AL 10252013 RED _b3.gpr 64 U
Slide11 RowH 123 910AL 10252013 RED _b1.gpr 159 U
Slide11 RowH 123 910AL 10252013 RED _b2.gpr 38 U
Slide11 RowH 123 910AL 10252013 RED _b3.gpr 90 U
Slide11_RowA 123 910AL 10252013 RED _b1.gpr 07 U
Slide11_RowA 123 910AL 10252013 RED _b2.gpr L2 L
Slide11_RowA 123 910AL 10252013 RED _b3.gpr 73 U
Slide11_RowB 123 910AL 10252013 RED _b1.gpr M9 M
Slide11_RowB 123 910AL 10252013 RED _b2.gpr 91 U
Slide11_RowB 123 910AL 10252013 RED _b3.gpr M9 M
Slide11_RowC 123 910AL 10252013 RED _b1.gpr M4 M
Slide11_RowC 123 910AL 10252013 RED _b2.gpr 103 U
Slide11_RowC 123 910AL 10252013 RED _b3.gpr 21 U
Slide11_RowD 123 910AL 10252013 RED _b1.gpr 04 U
Slide11_RowD 123 910AL 10252013 RED _b2.gpr 124 U
Slide11_RowD 123 910AL 10252013 RED _b3.gpr 7 U
Slide11_RowE 123 910AL 10252013 RED _b1.gpr R9 R
Slide11_RowE 123 910AL 10252013 RED _b2.gpr 19 U
Slide11_RowE 123 910AL 10252013 RED _b3.gpr 23 U


DEN
L
M
MAL
N
NORM
O
P
Q
R
S
U
WNV


72.7
  1. 455
  2. 727

59.1
  1. 182
  2. 591

45.5
0.434

45.5
0.455


72.7 0.455 0.727
59.1 0.182 0.591
45.5 -0.0909 0.455
45.5 -0.0909 0.434


j48graft tree all
83.9
  1. 210
  2. 645


smo all
87.4
0
  1. 5

smo random all
87.4
0
  1. 5

j48 graft tree all random
85.1
0.429

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