ram processor storage and time info for characterizing networks 03-04-2015d1621
2015-03-06ram processor storage and time info for characterizing networks 03-04-2015d1621
- Is it possible to analyze all of the metrics (except for search information entropy; so n m avg_shortest_path diameter clustering_coefficient power_law_exponent) constructed from a gene co-expression network of 64,000 genes in a reasonable amount of time?
- -
estimates on Samsung Ativ Book 6 Laptop
{
features n m time (s) metrics calculated note
250 247 4799 5 "n m avg_shortest_path diameter clustering_coefficient power_law_exponent" -
300 300 6782 9 "n m avg_shortest_path diameter clustering_coefficient power_law_exponent" -
1000 1001 72934 >7*60 "n m avg_shortest_path diameter clustering_coefficient power_law_exponent" It's the clustering coefficient that is taking so long to calculate; maybe this can be approximated as well
1000 1001 72934 82.112 "n m avg_shortest_path diameter power_law_exponent"
10000 10000 - >18*60 - With 10,000 features, the program starts outputting all of the data into multiple text files. . .
10000 10000 8203987 >12*60*60 - I tried to just calculate search information entropy with just a 1,000 node pairs, but I don't think the all pairs shortest paths was calculated in a reasonable time
note that I have seen that the eixe cnio computer is faster than my samsung ativ book 6 computer, but it still takes quite a while to try to evaluate the network from 72,934 features
estimates on eixe computer
features n m time (s) metrics calculated note
1000 1001 72934 1418.001 "n m avg_shortest_path diameter clustering_coefficient power_law_exponent"
}