pure text notes on platform for screening cDNA libraries section 8-18-13

2014-08-29

Much of the content for this section derives from the following document
"F:\kurt\storage\CIM Research Folder\DR\2013\8-2-13\dna vaccine paper galley proof\2013HV0047R - edited Kurt 8-2-13.pdf"

Here's the document for the "paper associated with dna vaccine conference"
"F:\kurt\storage\CIM Research Folder\DR\2013\8-10-13\azim58 wikispaces download as of 8-10-13\Short communication paper associated with DNA Vaccine Conference 2-14-13.html"

info for "Example SEREX nitrocellulose membrane" figure

Source of information: http://www.azim58.wikispaces.net/file/view/Colony+Hybridization+3-25-12.svg
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\Spring 2012 General Meeting 4-4-12.ppt"

info for timeline for tumor group
"F:\kurt\storage\CIM Research Folder\kwhittem\Records in CIM Folder\Categorical Records\Biodesign\Immunosignature to Antigen Bridge Project\Tumor cDNA Library\tumor injection\timeline\tumor timeline.png"
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\April 2012 events\presentation\Spring 2012 Committee Meeting 4-26-12.pptx"

info for timeline for smc1fs group
"F:\kurt\storage\CIM Research Folder\kwhittem\Records in CIM Folder\Categorical Records\Biodesign\Immunosignature to Antigen Bridge Project\Tumor cDNA Library\tumor injection\timeline\smc1fs timeline.svg"
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\April 2012 events\presentation\Spring 2012 Committee Meeting 4-26-12.pptx"

info for "Logistics of printing figure"

F:\kurt\storage\CIM Research Folder\kwhittem\Committee\Spring 2011 Committee Meeting\Diagrams
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\April 2012 events\presentation\Spring 2012 Committee Meeting 4-26-12.pptx"

picture of Biomek
F:\kurt\storage\CIM Research Folder\DR\2013\1-18-13\data_download\2040

picture of HiGro
http://azim58.wikispaces.com/Pictures+of+HiGro

Automated colony counting figure

Original source of plate picture: 18 B 10-2
-L:\storage\CIM Research Folder\kwhittem\Records in CIM Folder\Categorical Records\Biodesign\Immunosignature to Antigen Bridge Project\Tumor cDNA Library\Printing Library onto array\Printing Actual Tumor cDNA Library\Colonies on plate 2-16-12
Location of ImageJ edited files
-"L:\storage\CIM Research Folder\kwhittem\Records in CIM Folder\Categorical Records\Biodesign\Immunosignature to Antigen Bridge Project\Tumor cDNA Library\Printing Library onto array\Printing Actual Tumor cDNA Library\Colonies on plate 2-16-12\ImageJ.zip"
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\April 2012 events\presentation\Spring 2012 Committee Meeting 4-26-12.pptx"

troubleshooting protein production in 96 well plate portal 03-30-2014d1128

info for "Oncyte SuperNova Nitrocellulose Film-Slide" figure here

Location of picture of slide: http://www.azim58.wikispaces.net/Grace+Biolabs+Nitrocellulose+Pics
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\Fall 2012 Committee Meeting Presentation 12-19-12\version with links to info\Fall 2012 Committee Meeting Presentation 10-24-12.pptx"

info about summary of print runs 9-2-13
-see wikidpad

info for slide image figure found here
F:/kurt/storage/CIM Research Folder/DR/2013/8-10-13/azim58 wikispaces download as of 8-10-13/Slide Image Figure 3-10-13.html

info for smc1fs pc figure found here
F:/kurt/storage/CIM%20Research%20Folder/DR/2013/8-10-13/azim58%20wikispaces%20download%20as%20of%208-10-13/SMC1fs%20PC%20detection%20figure%203-10-13.html

SMC1fs diluted into lysate figure

http://www.azim58.wikispaces.net/Cell+Lysate+Print+12
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\General Meeting Presentation 10-24-12\version with links to info\General Meeting Presentation 10-24-12.pptx"

Bar graph of intensity from SMC1fs lysates

http://www.azim58.wikispaces.net/Cell+Lysate+Print+12
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\General Meeting Presentation 10-24-12\version with links to info\General Meeting Presentation 10-24-12.pptx"

info for "Tumor library array probed with SMC1fs sera"

"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2012\Fall 2012 Committee Meeting Presentation 12-19-12\version with links to info\Fall 2012 Committee Meeting Presentation 10-24-12.pptx"
"F:\kurt\storage\CIM Research Folder\DR\2012\8-25-12\8-25-12_1402\Application of sera onto array\cell lysate 3-2-12\smc1fs and puc19 locations\smc1fs and puc19 spots.svg"

Table of categories of features for lysate screen figure 3-28-13
F:/kurt/storage/CIM%20Research%20Folder/DR/2013/8-10-13/azim58%20wikispaces%20download%20as%20of%208-10-13/Table%20of%20categories%20of%20features%20for%20lysate%20screen%20figure%203-28-13.html

figure about selection of lysates from tumor lysate screens 3-8-13
F:/kurt/storage/CIM%20Research%20Folder/DR/2013/8-10-13/azim58%20wikispaces%20download%20as%20of%208-10-13/figure%20about%20selection%20of%20lysates%20from%20tumor%20lysate%20screens%203-8-13.html

table of transcript info here
F:/kurt/storage/CIM%20Research%20Folder/DR/2013/8-10-13/azim58%20wikispaces%20download%20as%20of%208-10-13/Table%20of%20Transcript%20Info%203-10-13.html

figures about pcr screening and sera on 3K array found here
"F:\kurt\storage\CIM Research Folder\kwhittem\Presentations\2013\General Meeting Presentation 8-14-13\General Meeting Presentation 8-14-13.pptx"
and
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\construction of tile plots for pcr screens 8-11-13.txt“
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\summary of pcr screen results for 41 pools 4-9-13 as of 8-11-13.xlsx“
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\summary of pcr screen results for 41 pools 4-9-13 as of 8-11-13.ggp“
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\summary of pcr screen results for 41 pools 4-9-13 as of 8-11-13.PNG"
and
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\construction of tile plots for pcr screens 8-11-13.txt"
file here
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\summary of pcr screen results for 96 pools 5-23-13 as of 8-11-13.ggp"
png file here
"F:\kurt\storage\CIM Research Folder\DR\2013\8-11-13\tile plots\summary of pcr screen results for 96 pools 5-23-13 as of 8-11-13.PNG"

backlinks
"F:\kurt\storage\CIM Research Folder\DR\2013\8-10-13\azim58 wikispaces download as of 8-10-13\Sections of Dissertation started 11-17-12.txt"