What motif does the tafy peptide share with original_

2015-01-13

azim58 - What motif does the tafy peptide share with original?



o Input
- >human
CCGIYCHEEPQREDSSI
>TAFY
TAFYRTLTKHEVDPGIA
o Output
- basically just HE motif
- highest score 5.78213
- Score: 5.78213 Columns: 2 Sequences: 2

***
human 7 HE 8 + 5.78
TAFY 10 HE 11 + 5.78

HE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12


What about the other peptides?


o Input
- >human_smc1fs
CCGIYCHEEPQREDSSI
>TISKYVM
TISKYVMVEPMRQHEEWGSC

o Output
- Basically an HEE and a Y. . .PQRE was found
- highest score: 7.85694
- Detailed results 2-26-12 1015


o Input
- >human_smc1fs
CCGIYCHEEPQREDSSI
>AVSHQ
AVSHQEMNEGEQGPMREGSC

o Output
- basically pqregs and
- highest score 7.15938
- Detailed results 2-26-12 1021


o Input
- >human_smc1fs
CCGIYCHEEPQREDSSI
>RVGEM
RVGEMPMREYDISGGSGGSC

o Output
- basically just EMPQRE motif
- highest score 7.12031
- Detailed results 2-26-12 1027


o Input
- >human_smc1fs
CCGIYCHEEPQREDSSI
>WKPVP
WKPVPMRDFRTQPLMGDGSC

o Output
- basically just PQRE motif
- highest score 4.70316
- Detailed results 2-26-12 1031



All peptides and their scores
TISKY 7.85694
AVSHQ 7.15938
RVGEM 7.12031
TAFY 5.78213
WKPVP 4.70316

Order of peptides based on intensity on array
TISKY
AVSHQ
RVGEM
TAFY
WKPVP