Test_Immunosignature_Data_020312

2015-01-13

azim58 - Test_Immunosignature_Data_020312


import java.text.DateFormat;
import java.text.SimpleDateFormat;
import java.util.*;

//this time I will test the distributions while using a constant bin size
of 10

public class Test_Immunosignature_Data_020312 





private UsefulTools useful_tools = new UsefulTools();


private Histogram_Distribution_Finder hdf = new


Histogram_Distribution_Finder();


private Histogram_Distribution hd = new Histogram_Distribution();


String intensity_data_directory = "";


String result_data_directory = "";


/**





* @param args


*/


public static void main(String[] args) {


// TODO Auto-generated method stub


Test_Immunosignature_Data_020112 tid = new


Test_Immunosignature_Data_020112();



public Test_Immunosignature_Data_020312() 








System.out.println(useful_tools.getTime());


this.intensity_data_directory = "L:\\storage\\CIM Research


Folder\\kwhittem\\Records in CIM Folder\\Categorical


Records\\Biodesign\\Entropy of Immunosignature\\Entropy of


Immunosignature Experiment 011812\\intensities";


this.result_data_directory = "L:\\storage\\CIM Research


Folder\\kwhittem\\Records in CIM Folder\\Categorical


Records\\Biodesign\\Entropy of Immunosignature\\Entropy of


Immunosignature Experiment 011812\\analysis\\Constant Bin Size";








/*


ArrayList a406971_bot =


useful_tools.storeTextFiletoArrayList(intensity_data_directory +


"\\\\406971_bot.txt");


hdf.searchRangeOfDistributions(a406971_bot);


Histogram_Distribution hd_a406971_bot = hdf.getMostComplexDistribution();


useful_tools.createTextFile(result_data_directory, "406971_bot.txt",


hd_a406971_bot.toString());


*/


ArrayList samples_to_process =


useful_tools.stringWithCommasToArrayList("406971_bot, 406971_top,


407166_bot, 407166_top, 407167_bot, 407167_top, 407788_bot, 407788_top");


for(int i=0; i<samples_to_process.size(); i++)


{


processSample(samples_to_process.get(i).toString());





System.out.println(useful_tools.getTime());
}


public void processSample(String sample_name) 


ArrayList raw_data =


useful_tools.storeTextFiletoArrayList(intensity_data_directory + "\\" +


sample_name + ".txt");


hd.createDistribution(10, raw_data);


useful_tools.createTextFile(result_data_directory, sample_name + ".txt",


hd.toString());

}