Process for running a program on saguaro

2015-01-13

++ Process for running a program on saguaro

Make a pbs file which should look something like this:



#!/bin/bash


#PBS -l nodes=1:ppn=1


#PBS -j oe


#PBS -l mem=6gb


#PBS -l walltime=20:50:00








java  -jar  "/home/lwang138/entropy/input/EntropyOfArray090413_2.jar" home/lwang138/entropy/input/46/110 "4-22 S4 A1 Hi P60 092612 #8-15 5um K" -Xmx6144

run the pbs file from the command line by running a command like
-qsub /home/lwang138/sas/jar.pbs
check the status of the program by running a command like
-watch qstat -n
-or like: "qstat"
check the log file by looking at the job id and then finding the corresponding log file
-e.g for job id "6107384.newmoab.s59-15" the corresponding file was in the home folder and titled jar.pbs.o06107384

Process for ending a program on saguaro
just "qdel jobid", e.g. qdel 2040020