Mouse Transcripts

2015-01-13

azim58 - Mouse Transcripts


Mouse RNA transcripts (the mouse refseq rna database) can be downloaded.

Information here
http://www.ncbi.nlm.nih.gov/books/NBK50679/#RefSeqFAQ.what_data_are_availab
le_for_ft
Download location here
ftp://ftp.ncbi.nlm.nih.gov/refseq/M_musculus/mRNA_Prot/
Personally downloaded file here
"C:\kurt\storage\CIM Research
Folder\DR\2013\2-26-13\mouse_transcripts\mouse.rna.fna"

Spreadsheets of this data here
"C:\kurt\storage\CIM Research
Folder\DR\2013\2-26-13\mouse_transcripts\mouse_transcripts_spreadsheet.xlsx
"
and
"C:\kurt\storage\CIM Research
Folder\DR\2013\2-26-13\mouse_transcripts\mouse_transcripts_spreadsheet_sort
ed.xlsx"

Summary of Mouse RefSeq RNA (RNA molecule length distribution)
"C:\kurt\storage\CIM Research
Folder\DR\2013\2-26-13\mouse_transcripts\Summary of Mouse RefSeq RNA
2-26-13.docx"
Smallest mouse RNA (28 bp): Mus musculus small nucleolar RNA, C/D box 98
(Snord98), small nucleolar RNA
Largest mouse RNA (32759 bp): Mus musculus KCNQ1 overlapping transcript 1
(Kcnq1ot1), non-coding RNA
Average RNA Length (average transcript size): 2653 bp
Median RNA Length (median transcript size): 2126 bp
93.1 % of all RNAs are less than 6,000 bp


see RNA Transcriptome