Initial Experiment 1-18-12

2015-01-13

Pooled old and young influenza live attenuated PR8 mice samples were
applied to the array. (two samples, four duplicates each)

GRP6 (Group 6) - Old

6-7 aged infected mice (about a year and 2 months old), 1*10^4

pfu/dose, 40 days after infection
GRP2 (Group 2) - Young

10 young infected (about 6-8 weeks old), 1*10^4 pfu/dose, 40 days

after infection

Zbig ran the slides 1-18-12 and they were aligned on 1-19-12.
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\407166_bot-GRP6_01182012.gpr"

Files saved at an address kind of like S:\Administration\Peptide Array
Core\Entropy of Immunosignature
Actual Location:
S:\Administration\PeptideArrayCore\Entropy of Immunosignatures\01182012
Kurt
or alternatively
C:\kurt\storage\CIM Research Folder\kwhittem\Records in CIM
Folder\Categorical Records\Biodesign\Entropy of Immunosignature\Entropy
of Immunosignature Experiment 011812

some gprs
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\407166_bot-GRP6_01182012.gpr"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\406971_top-GRP6_01182012.gpr"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\406971_bot-GRP2_01182012.gpr"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\406971_bot.txt"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\406971_top.txt"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\407166_bot.txt"

===========================================================================
I would like to make a little program than can split a list of numbers
into different bins. My ultimate goal would be to have a program that can
split a distribution of numbers into bins with the bin size chosen so
that there are the maximum number of bins with different numbers of
elements.

I think the basic structure of the program would be something like:

create every possible distribution with every bin size and find the

one with the most complex distribution (the greatest number of bins
with a different number of elements in them)

Histogram_Distribution Object

o original raw list of numbers
o List of bins with their numbers
o List of bins with the number of elements in each bin
o total number of different bins with a different number of elements
o bin size
o create distribution(bin size, list of numbers for distribution)
- set the bin size
- create all of the bins (a bunch of ArrayLists in Java)
- go through all of the numbers and assign each one to the
appropriate bin
- determine the number of bins with different numbers of
elements and return this distribution

Histogram Distribution Object Code

GRP6(old) is associated with 407167_top, 406971_top, 407788_bot,
407166_bot
GRP2(young) is associated with 407167_bot, 406971_bot, 407788_top,
407166_top

===========================================================================

Powerpoint
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy
Summary.ppt"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary
2 2-14-12.ppt"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary
3 3-2-12.ppt"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\EXP800-187 Aged and Young
summary figures.pptx"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary
4 3-27-12.ppt" (p values were added)
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary
5 4-1-12.ppt"
"C:\kurt\storage\CIM Research
Folder\DR\2013\1-26-13\data_download\1920\Young vs Aged Distribution
Figure 4-3-12.svg"
"C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy 6 4-3-12.pptx"