Detailed results 2-26-12 1031

2015-01-13

azim58 - Detailed results 2-26-12 1031

GLAM2: Gapped Local Alignment of Motifs
Version 1056

/share/apps/meme_4.8.1/bin/glam2 -Q -O . -M -z 2 -a 2 -b 50 -w 50 -r 10

n 2000 -D 0.1 -E 2 -I 0.02 -J 1 p sequences

Sequences: 2
Greatest sequence length: 20
Residue counts: A=0 C=4 D=3 E=3 F=1 G=3 H=1 I=2 K=1 L=1 M=2 N=0 P=4 Q=2
R=3 S=3 T=1 V=1 W=1 Y=1 x=0

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 4.70316 Columns: 4 Sequences: 2

human_smc1fs 10 PQRE 13 + 5.16
WKPVP 5 PMRD 8 + 5.44

PMRD
Q E

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.651

Score: 3.21986 Columns: 8 Sequences: 2

human_smc1fs 9 EPQREDSS 16 + 4.47
WKPVP 12 QPLMGDGS 19 + 4.68

EPLMEDGS
Q QRG S

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0.212
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 -1.26
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 -0.823
0 -0.0429
0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.909
0 -0.0429
0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.66
0 -0.0429
0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 -0.529
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47