Detailed results 2-26-12 1027

2015-01-13

azim58 - Detailed results 2-26-12 1027

GLAM2: Gapped Local Alignment of Motifs
Version 1056

/share/apps/meme_4.8.1/bin/glam2 -Q -O . -M -z 2 -a 2 -b 50 -w 50 -r 10

n 2000 -D 0.1 -E 2 -I 0.02 -J 1 p sequences

Sequences: 2
Greatest sequence length: 20
Residue counts: A=0 C=4 D=2 E=5 F=0 G=6 H=1 I=3 K=0 L=0 M=2 N=0 P=2 Q=1
R=3 S=5 T=0 V=1 W=0 Y=2 x=0

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.12031 Columns: 6 Sequences: 2

human_smc1fs 8 EEPQRE 13 + 7.88
RVGEM 4 EMPMRE 9 + 8.02

EEPMRE
M Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -1.08
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12