Detailed results 2-26-12 1021

2015-01-13

azim58 - Detailed results 2-26-12 1021

GLAM2: Gapped Local Alignment of Motifs
Version 1056

/share/apps/meme_4.8.1/bin/glam2 -Q -O . -M -z 2 -a 2 -b 50 -w 50 -r 10

n 2000 -D 0.1 -E 2 -I 0.02 -J 1 p sequences

Sequences: 2
Greatest sequence length: 20
Residue counts: A=1 C=4 D=1 E=7 F=0 G=4 H=2 I=2 K=0 L=0 M=2 N=1 P=2 Q=3
R=2 S=4 T=0 V=1 W=0 Y=1 x=0

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 7.15938 Columns: 6 Sequences: 2

human_smc1fs 10 PQREDS 15 + 8.13
AVSHQ 14 PMREGS 19 + 8.21

PMREDS
Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47

Score: 6.37663 Columns: 8 Sequences: 2

human_smc1fs 8 EEPQREDS 15 + 7.75
AVSHQ 12 QGPMREGS 19 + 7.59

EEPMREDS
QG Q G

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0.212
0 -0.0429
0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.909
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.396
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1.47