Detailed results 2-26-12 1015

2015-01-13

azim58 - Detailed results 2-26-12 1015

GLAM2: Gapped Local Alignment of Motifs
Version 1056

/share/apps/meme_4.8.1/bin/glam2 -Q -O . -M -z 2 -a 2 -b 50 -w 50 -r 10

n 2000 -D 0.1 -E 2 -I 0.02 -J 1 p sequences

Sequences: 2
Greatest sequence length: 20
Residue counts: A=0 C=4 D=1 E=6 F=0 G=2 H=2 I=3 K=1 L=0 M=2 N=0 P=2 Q=2
R=2 S=4 T=1 V=2 W=1 Y=2 x=0

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.85694 Columns: 3 Sequences: 2

human_smc1fs 7 HEE 9 + 7.94
TISKYVM 14 HEE 16 + 7.94

HEE

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

Score: 7.48408 Columns: 9 Sequences: 2

human_smc1fs 5 YCHEEPQRE 13 + 8.34
TISKYVM 5 YVMVEPMRQ 13 + 8.46

YCHEEPMRE
VMV Q Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3.37
0 -0.0429
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -0.270
0 -0.0429
0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -0.596
0 -0.0429
0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -1.19
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0.212

Score: 7.48408 Columns: 9 Sequences: 2

human_smc1fs 5 YCHEEPQRE 13 + 8.34
TISKYVM 5 YVMVEPMRQ 13 + 8.46

YCHEEPMRE
VMV Q Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3.37
0 -0.0429
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -0.270
0 -0.0429
0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -0.596
0 -0.0429
0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -1.19
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0.212

Score: 7.48408 Columns: 9 Sequences: 2

**

human_smc1fs 5 YCHEEPQRE 13 + 8.34
TISKYVM 5 YVMVEPMRQ 13 + 8.46

YCHEEPMRE
VMV Q Q

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3.37
0 -0.0429
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -0.270
0 -0.0429
0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 -0.596
0 -0.0429
0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -1.19
0 -0.0429
0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2.70
0 -0.0429
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 -0.878
0 -0.0429
0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2.36
0 -0.0429
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0.212