tried to calculate 330k data 9-2-13

2014-08-29

++ tried to calculate 330k data 9-2-13

list of files and folders in "Experiments" folder here
S:\Research\CIM-HealthTell\Experiments
as of 8-31-13
-"F:\kurt\storage\CIM Research Folder\DR\2013\8-31-13\list of files and folders 8-31-13.txt"

Now I need to see which file names contain the number "46".  There were 11 hits of "46".
{
	Line 27: 10/04/2012  11:46 AM    <DIR>          07112012 HTChipV4-30 Alternate Side Chain Protection Exp1 (HT-30)
	Line 40: 08/15/2013  10:40 AM    <DIR>          10242012 HTChipv4P-46 Full Run (HTV4P-46)
	Line 40: 08/15/2013  10:40 AM    <DIR>          10242012 HTChipv4P-46 Full Run (HTV4P-46)
	Line 83: 05/22/2013  12:46 PM    <DIR>          20130425 HTChipV4R-92 3ET-Millipore Filtering-Biotin Exposure (HT-92)
	Line 136: 05/11/2012  05:46 PM    <DIR>          EWAM E-6 (Seventeen cycle test v2)
	Line 152: 05/04/2012  10:46 AM    <DIR>          HTCHIP3-2 (Epitopes and MALDI at 75 C)
	Line 159: 12/03/2012  10:46 AM    <DIR>          I-4
	Line 163: 09/14/2012  06:46 PM    <DIR>          I-8
	Line 188: 07/18/2013  12:46 PM    <DIR>          SVM-C10 (Exposure Time)
	Line 213: 05/03/2012  08:46 AM    <DIR>          SVM-D7 (KWLDSLK synthesis)
	Line 244:              214 Dir(s)  181,466,189,824 bytes free
	}
It looks like this line!^ is the only one without 46 in the "time" part of the info about the file
10242012 HTChipv4P-46 Full Run (HTV4P-46)

What is the composition of the wafers?
-I think a wafer is made up of 9 slides, and each slide can support 24 samples

Lu and I looked through image files to see which gprs correlate with good images.  We copied the gpr files 
from
S:\Research\CIM-HealthTell\Experiments\10242012 HTChipv4P-46 Full Run (HTV4P-46)\
to here:
S:\Research\Cancer_Eradication\Discovering tumor specific antigens\entropy\8-31-13

Next looked through wafer 22
S:\Research\CIM-HealthTell\Experiments\06252012 HTChipV4-22 Production Run 3 (HT-22)

location of good gprs from wafer 42
"S:\Research\Cancer_Eradication\Discovering tumor specific antigens\entropy\8-31-13\wafer 22"
(142 gprs total)
location of good gprs from wafer 22
"S:\Research\Cancer_Eradication\Discovering tumor specific antigens\entropy\8-31-13\wafer 46"
(109 gprs total)
(251 gprs for both wafers)

I want to make sure that the program works when making calculations with the 330k samples.  I will choose one gpr to calculate manually and compare the program with this file.
I chose this file from slide 4 of the HT-22 array.
"S:\Research\CIM-HealthTell\Experiments\06252012 HTChipV4-22 Production Run 3 (HT-22)\Slide 4\5 micron gprs\4-22 S4 A1 Hi P60 092612 #8-15 5um K.gpr"
I stored the manual calculation here
"F:\kurt\storage\CIM Research Folder\DR\2013\8-31-13\manual example 330k calculation 8-31-13.xlsx"

[test of one 330k gpr for cv and entropy normalized and non-normalized]

azim58wiki: