sequencing results from 7-14-13 experiment

2014-08-29

azim58 - sequencing results from 7-14-13 experiment

small fragmment (expected: 405 bp?)
sequence from slain primers

CCTGCCCTTAATAGGTTTTCTCCCAGTACTGGTGATTGAACCTGTTGCCTGAGTATGCTAAGCAGTTGCTCTCCC
CTGCAGCTGCCCCCAGCCCACTTGACTGTGCAGACTCAGGGCTTGCAATTACTCGATTCTCCGCGGCTGAGCTTC
CCATCGTCCTCTCTCCCTAAGGTCCTGAGTAGTTGAATACAGACTTGTGGTGCCATCCTTGCTTCAAAAGCCATA
TTTATATGAGTTCTCTTTGCTATGCAGCATG

This sequence aligns with Atl3
Blast results
Description Max score Total score Query cover E value Max ident Accession

Mus musculus atlastin GTPase 3 (Atl3), transcript variant 2, mRNA
448 448 94% 3e-125 100% NM_146091.4

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large fragment (expected: 21 bp)
sequence from slain primers (665 bp)
CCTCGTTCACGGTCTCCTGCCCGGGGAATAGAATACAGTAGAGCGTCCCCACAGCCTATGATTAGCCGCTTGCAG
CAGCCTCGCCTTTCCCTCCAAGGCCATCCCACAGATTTACAGACGAGCAATGTTAAAAATGAAGAAAAACTTAGA
CGCAGTCTTCCAAACCTATCCCGAACATCGAGCACACAGGTTGACTCTGTGAAAAGCAGTAGAAGTGACTCCAAT
TTTCAAGTGCCAAATGGAGGAATACCTCGAATGCAGCCTCAGGCTTCAGCCACTTCTCAAAGGCTGAAAAGTTTG
CCTCGTACTTCCCTCAAAGCCAAACAGTTGCTTCCAACTTCATCTACAAAAAGAGTACCTTCTCCAGGCAAATTC
CGCTCCCCTGCAGCACCGTCTCCATTGGCTCTTCGGCAACCAGTGAAAGCGTTTAGTAACCATGGCTCTGGTTCT
GGTAGCCAAGAAACTACCCAGTTCACACAAACCACCTCCTCACCTGGGCCTCCTGTGGTGCAGAACTCAGCCCCA
GCAAACCCTTCCAGCAATATCAACAGTGCCACTCTAACCAGACCTGCAGGGACAACTGCAATGAGGAGTGGCCTG
CCCCGGCCAAGCGCCCCTTCTGCGGGGGGCATCCCAGTGCCTCGCAGCAAGCTTGTACAGCCTGT

Select for downloading or viewing reports Description Max score Total
score Query cover E value Max ident Accession

Mus musculus SLAIN motif family, member 2 (Slain2), transcript variant 1,
mRNA
1229 1229 100% 0.0 100% NM_153567.2

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