selection of single clone experiment data 030913

2014-08-29

azim58 - selection of single clone experiment data 030913

for the single clone selection I need to decide which set of data to use

I would like to look at a scatterplot for all of the sets of data from
the 9-29-12 experiment as well as the 10-11-12 experiment

some data files

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10-1-12_1to1000.csv
file_path for R
"C:/kurt/storage/CIM Research Folder/DR/2013/3-9-13/work on paper/sets of
single clone data/10-1-12_1to1000.csv"

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Basic program to use for R to plot the scatterplots with labels

===========================================================================

#Basically load data with a command like
scatterplot_data <- read.csv("C:/kurt/storage/CIM Research
Folder/DR/2013/3-9-13/work on paper/sets of single clone
data/10-1-12_1to1000.csv")

#plot the data
plot(scatterplot_data$log2_fold_change, scatterplot_data$NEGLOG10_p_value)

#load the necessary library
library(calibrate)

#add labels to datapoints
textxy(scatterplot_data$log2_fold_change,
scatterplot_data$NEGLOG10_p_value, scatterplot_data$Name)

===========================================================================

several single clone scatterplots in one document found here
"C:\kurt\storage\CIM Research Folder\DR\2013\3-9-13\work on paper\sets of
single clone data\several single clone scatterplots.svg"

From looking at all of these scatterplots, I will choose the
10-1-12_1to1000 dataset since it has the largest range of p values and
fold change values for data that was obtained the soonest after the
experiment. Note that there was a rescan of this sample at a later time.

azim58wiki: