obtaining remaining calculations for 330k data 9-16-13

2014-08-29

++ obtaining remaining calculations for 330k data 9-16-13

results of entropy program run
{
There should be 7 that are complete now.
entropy	cv	norm_entropy	norm_cv
100	- <- has 532 median
102	- <- has 532 median
104	9.085677125392328	1.595184746414981	5.951722099425068	1.5974551314019851
105	9.113400655141866	1.6724887892506526	6.192229643372197	1.674894095327445
106	9.096987666261892	1.5280600274280118	6.063822852809222	1.5309022481391588
108	0.0 <- has 532 median
42	9.278057435589153	1.4357259411538181	5.773181525655899	1.4385439597360912
43	8.765132539872369	1.4208266332327366	5.841615159414257	1.424545080065471
82	- <- has 532 median
86	9.218098147695956	9.218098147695956	5.707260149301972	0.9186058664376466
88	9.00352963698547	0.9631484455132815	5.674878826713822	0.965992045030718
94	- <- has 532 median
}

Of the samples that did not run, why didn't they run?
Here are the runtimes of the samples
{
-6156569.newmoab            jobTemp.saguaro  lwang138        00:01:01 C serial  
--corresponds to 
java  -jar  "/home/lwang138/entropy/input/EntropyOfArray090413_2.jar" /home/lwang138/entropy/input/rerun_of_46/42 "4-46 S4 H3 Hi P20 111312 DTRA 1 S" -Xmx6144       
^this doesn't make sense though because 42 completed successfully.
6156575.newmoab            jobTemp.saguaro  lwang138        12:04:47 C serial  
6156576.newmoab            jobTemp.saguaro  lwang138        12:06:23 C serial         
6156577.newmoab            jobTemp.saguaro  lwang138        12:19:00 C serial         
6156578.newmoab            jobTemp.saguaro  lwang138        12:20:55 C serial         
6156579.newmoab            jobTemp.saguaro  lwang138        00:00:00 C serial         
6156580.newmoab            jobTemp.saguaro  lwang138        00:00:00 C serial         
6156581.newmoab            jobTemp.saguaro  lwang138        00:00:00 C serial         
6156582.newmoab            jobTemp.saguaro  lwang138        10:18:39 C serial         
6156583.newmoab            jobTemp.saguaro  lwang138        10:07:01 C serial         
6156584.newmoab            jobTemp.saguaro  lwang138        10:13:01 C serial         
6156585.newmoab            jobTemp.saguaro  lwang138        00:00:58 C serial 
}
There is a possibility these jobs had a problem because there was a problem with the filename.  For example, perhaps the following symbols cause problems: _, #, .
I'll replace _ with u
and
# with n
and
. with d

Now I'll start a new series of jobs for these 5 samples.
location of samples here
/home/lwang138/entropy/input/rerun_of_46_2

chmod +x jobScript.saguaro
./jobScript.saguaro cmd_original.saguaro pbs.saguaro

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