location of data and files for figures for smc peptide paper 03-01-2015d2207

2015-03-01

03-01-2015d1945

Okay I would like to find the data for Shen

All of the data has been collected here (This zip folder has everything in one place.  It has all of the final figures, final tables, raw data, some intermediate files from raw data to final figures, as well as the final version of the paper)
-"C:\Users\Kurt Whittemore\Box Sync\temp_priv\03-01-2015d1949\data for figures.zip"
and
"C:\Users\Kurt Whittemore\Box Sync\temp_priv\03-01-2015d1949\data for figures"

Figure titles
Fig. 1.  Selective binding of anti-SMCfs serumto a library of non-natural sequence peptides printed on a microarray.  
Fig. 2.  Analyses of anti-SMCfs serum pre-absorbed against SMCfs peptide.
A.  Validation of SMCfs antibody depletion from immune serum.  
B.  Signal intensities changes in anti-SMCfs serum binding following peptide-specific depletion. 
Fig. 3.  ELISA determinations of anti-SMCfssera binding toarray-selected peptides.
A. Immune serum. 
B. Control serum. 
Fig. 4.  ELISA analysis of affinity-purified antibodies.
Fig. 5. Differential binding of affinity-purified anti-SMCfs antibodies to SMCfs versus library-derived and mimotopes.

Information about the sources of the figures can be found here: 
"D:\kurt\storage\CIM Research Folder\kwhittem\Papers\My Possible Papers\smc1\Mining Random Space for Real Antibody Epitopes2 5-4-12.docx"

Figure 2a data found here
D:\kurt\storage\CIM Research Folder\DR\2012\5-3-12\figs from Shen\ELISA analysis of sorted rabbit serum

Figure 2b Heatmap (Figure 1 with the 108 peptides is also found in a subfolder)
Heatmap generated in Genespring
"C:\kurt\storage\CIM Research Folder\DR\2012\6-5-12\raw intensities\raw intensity heatmap\108 peptide heatmap 3.svg"
This heatmap makes use of the heatmap intensities here 
"C:\kurt\storage\CIM Research Folder\DR\2012\6-5-12\raw intensities\108 peptide intensities in blocking experiment.xlsx"
All 10,000 peptide intensities in the blocking experiment can be found here:
"C:\kurt\storage\CIM Research Folder\DR\2012\6-5-12\raw intensities\all 10000 peptide intensities in blocking experiment.xlsx"

Figures 3, 4, and 5 found here
D:\kurt\storage\CIM Research Folder\DR\2012\5-3-12\figs from Shen

azim58wiki: