e-mailed Hojoon to get the chimeric transcript info 1-15-13

2013-12-01

azim58 - e-mailed Hojoon to get the chimeric transcript info 1-15-13

e-mail messages to Hojoon
see e-mail thread here
https://mail.google.com/mail/u/0/?ui=2&amp;shva=1#search/hojoon/13c3f3c6522
f4281

List of Chimeric Transcripts from Hojoon

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your dissertation
6 messages

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Kurt Whittemore <kurtwhittemore@gmail.com>
 Tue, Jan 15, 2013 at 10:23 AM

To: HoJoon Lee <hojoon.compbio@gmail.com>

Hi Hojoon,

I just finished reading your dissertation the other day. Very
interesting! Nice job! I have one question right now though. In the image
of the attached figure (Figure 3.2) to this email, do you have all of the
lists of transcripts at every step in this figure. In your dissertation
you give a table for the final PCR validated list (with the 48 chimeric
transcripts), but I don't know where I can find the preliminary lists,
and I would like to compare some of the genes from my cDNA expression
library to these lists. If it is convenient for you to find these lists,
could you send them to me! If it would take a lot of time and work for
you to dig through cryptic files to find these lists, then I guess you
don't need to worry about it, and I can do without the lists. Thanks for
any help and information you can offer me!

Best,
Kurt
 
 
 
 hojoon dissertation figure 3p2.png
175K

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HoJoon Lee <hojoon.compbio@gmail.com>
 Tue, Jan 15, 2013 at 12:18 PM

To: Kurt Whittemore <kurtwhittemore@gmail.com>

I will send you Excel table later tonight. I might give it to Shen
already.
[Quoted text hidden]
--
"Being happy doesn't mean everything is perfect. It means you've decided
to see beyond the imperfections"

Best Regards,
HoJoon Lee

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Kurt Whittemore <kurtwhittemore@gmail.com>
 Tue, Jan 15, 2013 at 12:22 PM

To: HoJoon Lee <hojoon.compbio@gmail.com>

Great thanks! No I talked to Shen before. He just has one of the final
tables. . like for the 48 pcr validated frameshift chimeric transcripts
or something.
[Quoted text hidden]

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Kurt Whittemore <kurtwhittemore@gmail.com>
 Fri, Jan 18, 2013 at 10:20 AM

To: HoJoon Lee <hojoon.compbio@gmail.com>

Hi Hojoon, in addition to my request for that data, I have one more
question. Did you already download the EST database and store it on the
Biodesign Shared drive? If so, where is the file location of that
database? Thanks again! I know that you are busy.

-Kurt

On Tue, Jan 15, 2013 at 12:18 PM, HoJoon Lee <hojoon.compbio@gmail.com>
wrote:
[Quoted text hidden]

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HoJoon Lee <hojoon.compbio@gmail.com>
 Wed, Jan 30, 2013 at 12:07 AM

To: Kurt Whittemore <kurtwhittemore@gmail.com>

You can find the EST sequences here:
S:\Research\Cancer_Eradication\HoJoon\HoJoon_DB\est_human_0907_2008[Quoted 
text hidden]
--
"Being happy doesn't mean everything is perfect. It means you've decided
to see beyond the imperfections"

Best Regards,
HoJoon Lee
 
 
 
 Total_FG_peptide_annotation2.xlsx
185K

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Kurt Whittemore <kurtwhittemore@gmail.com>
 Wed, Jan 30, 2013 at 9:32 AM

To: HoJoon Lee <hojoon.compbio@gmail.com>

Great thanks! I'm glad that you already have the EST database downloaded
somewhere. As for the spreadsheet. . I don't completely understand what I
am looking at. There are no titles at the top of the columns. Maybe I
should just be able to figure it out from looking at, but right now I'm
not completely sure what everything is. Is this document a response to my
question about figure 3p2 of your dissertation (I had an image of it
attached in a previous email in this thread)? Do you have a folder that
has each list in that figure separately? For example, I would look in the
folder and I would see that this is the list with the 5,234 EST chimeric
transcripts. This is the list with the 2,408 coding EST chimeric
transcripts. This is the list with the 170 chimeric transcripts . . etc.
If you don't have such a folder, then I guess don't worry about it.
Perhaps the spreadsheet you sent has all of the information I need, and I
just don't realize it.

Best,
Kurt
[Quoted text hidden]

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