code in convertSampleDataIntoCoIntensityNetwork before runnning into ram problem 11-06-2014d1423

2014-11-06

public void convertSampleDataIntoCoIntensityNetwork(double[][] values)
	{
		PearsonsCorrelation pc = new PearsonsCorrelation();
		
		//int[][] similarity_score_matrix = new int[values.length][values.length];
		//fill up the similarity score with absolute value correlation coefficient values
		/*
		for(int i=0; i<values.length; i++)
		{
			for(int j=i+1; j<values.length; j++)
			{
				//convert the current integer arrays to doubles for the pearson correlation coefficient function
				int[] i_first_row = values[i];
				int[] i_second_row = values[j];
				double[] d_first_row = new double[i_first_row.length];
				double [] d_second_row = new double[i_second_row.length];
				for(int array_conversion_count=0; array_conversion_count<i_first_row.length; array_conversion_count++)
				{
					d_first_row[array_conversion_count] = Integer.valueOf(i_first_row[array_conversion_count]).doubleValue();
				}
				for(int array_conversion_count=0; array_conversion_count<i_second_row.length; array_conversion_count++)
				{
					d_second_row[array_conversion_count] = Integer.valueOf(i_second_row[array_conversion_count]).doubleValue();
				}
				double calculated_similarity_score = Math.abs(pc.correlation(d_first_row, d_second_row));
				int i_calculated_similarity_score = Double.valueOf(calculated_similarity_score).intValue();
				similarity_score_matrix[i][j] = i_calculated_similarity_score;
				similarity_score_matrix[j][i] = i_calculated_similarity_score;
			}
		}
		*/
		//System.out.println(Arrays.deepToString(similarity_score_matrix));
	}

azim58wiki: