What motif does the tafy peptide share with original_

2015-01-13

azim58 - What motif does the tafy peptide share with original?

* TAFY peptide
  o Input
    - >human
    CCGIYCHEEPQREDSSI
    >TAFY
    TAFYRTLTKHEVDPGIA
  o Output
    - basically just HE motif
    - highest score 5.78213
    - Score: 5.78213 Columns: 2 Sequences: 2

***
    human 7 HE 8 + 5.78
    TAFY 10 HE 11 + 5.78

A C D E F G H I K L M N P Q R S T V W Y Del Ins Score
    0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.71
    0 -0.0429
    0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.12

What about the other peptides?

* TISKY
  o Input
    - >human_smc1fs
      CCGIYCHEEPQREDSSI
      >TISKYVM
      TISKYVMVEPMRQHEEWGSC

o Output
    - Basically an HEE and a Y. . .PQRE was found
    - highest score: 7.85694
    - Detailed results 2-26-12 1015

* AVSHQ
  o Input
    - >human_smc1fs
      CCGIYCHEEPQREDSSI
      >AVSHQ
      AVSHQEMNEGEQGPMREGSC

o Output
    - basically pqregs and
    - highest score 7.15938
    - Detailed results 2-26-12 1021

* RVGEM
  o Input
    - >human_smc1fs
      CCGIYCHEEPQREDSSI
      >RVGEM
      RVGEMPMREYDISGGSGGSC

o Output
    - basically just EMPQRE motif
    - highest score 7.12031
    - Detailed results 2-26-12 1027

* WKPVP
  o Input
    - >human_smc1fs
      CCGIYCHEEPQREDSSI
      >WKPVP
      WKPVPMRDFRTQPLMGDGSC

o Output
    - basically just PQRE motif
    - highest score 4.70316
    - Detailed results 2-26-12 1031

All peptides and their scores
TISKY 7.85694
AVSHQ 7.15938
RVGEM 7.12031
TAFY 5.78213
WKPVP 4.70316

Order of peptides based on intensity on array
TISKY
AVSHQ
RVGEM
TAFY
WKPVP

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