Short communication paper associated with DNA Vaccine Conference 2-14-13

2015-01-13

azim58 - Short communication paper associated with DNA Vaccine Conference
2-14-13

Short communication paper associated with DNA Vaccine Conference 2-14-13
aka
3p library for (3 prime library paper)
aka
3p library paper
aka
3p_library

some of the original email threads regarding paper
-https://mail.google.com/mail/u/0/?ui=2&amp;shva=1#label/Career/13c85c75a02
a5870
-https://mail.google.com/mail/u/0/?ui=2&amp;shva=1#label/Career/13c66d8c89e
18e47

Potential title for paper (newest to oldest)
A microarray method for identifying tumor antigens by screening a tumor cDNA expression library against cancer sera
A microarray method for identifying tumor immunogens by screening lysates
from a tumor cDNA library against cancer sera
Screening pooled tumor cDNA library lysate for immunogens

Running title
Screening pooled tumor cDNA library lysate for antigens

Location of my work on paper
C:\kurt\storage\CIM Research Folder\kwhittem\Papers\My Possible Papers\3p_library

authors
Kurt Whittemore and Kathryn Sykes

acknowledgements
John Lainson, Maran Montgomery, Luhui Shen, Phillip Stafford

Journal for this paper
Human Vaccines and Immunotherapeutics

Guidelines for authors found here
http://www.landesbioscience.com/journals/vaccines/guidelines/
some notes on guidlines for authors 2-15-13

some initial information can be found here
https://mail.google.com/mail/u/0/?ui=2&amp;shva=1#label/Career/13c66d8c89e1
8e47

Submission link
http://hv.msubmit.net/cgi-bin/main.plex?el=A7Ca3BzV7A2Dhv1J3A9H1Djz0D5odbS7
3dfprXuQQZ
e-mail here
https://mail.google.com/mail/u/0/?ui=2&amp;shva=1#search/ronald/13d5ae74fa6
d68f3

link to check manuscript [#|status] here
http://hv.msubmit.net/cgi-bin/main.plex?el=A5Ca4gb4A7Dhv5F2A9hYFASWq49GBw3M
3gKp9TwZ

Note that as I was assembling the rough draft for this paper, I was also
gathering information for the corresponding part of my dissertation.
see Information for 3 prime cDNA library started 2-15-13

Potential keywords for paper
need at least 7 keywords
cancer, tumor, vaccine, immunogen, cDNA, library, sera, antibody
-original older list
--cancer, tumor, vaccine, immunogen, cDNA, library, sera, antibody,
pools, lysate, clones, protein
here's a word cloud generated from wordle.net
"C:\kurt\storage\CIM Research Folder\DR\2013\3-19-13\work on
paper\word_cloud_of_3p_library_paper.png"

peer reviewer
Kathy wanted to choose a peer reviewer from this paper
Phage display: Concept, innovations, applications and future
http://www.sciencedirect.com/science/article/pii/S0734975010000972#
She liked Elena Pasquale
Elena Pasquale elenap@sanfordburnham.org Sanford Burnham Medical
[#|Research Institute]
She thought some Texas A&M people could be good.
She thought I should not choose people in the field too long such as Andy
White

Author Information
(first and last name, postal [#|address], work telephone number, e-mail
address)

a rough draft outline of the paper found here
"C:\kurt\storage\CIM Research Folder\kwhittem\Papers\My Possible
Papers\3p_library\paper\3p_library_rough_draft_2-15-13.docx"

Current version of paper (newest to oldest)
S:\Research\Cancer_Eradication\Users\kwhittem\DR\2013\7-18-13\smc_paper\edi
ted document\2013HV0047R.docx
and
"F:\kurt\storage\CIM Research Folder\DR\2013\7-18-13\smc paper\edited
document\2013HV0047R.docx"

"F:\kurt\storage\CIM Research Folder\kwhittem\Papers\My Possible
Papers\3p_library\paper\A microarray method for identifying tumor
antigens by screening a tumor cDNA expression library against cancer
sera.docx"
^ renamed from !^
"F:\kurt\storage\CIM Research Folder\kwhittem\Papers\My Possible
Papers\3p_library\paper\Kathy feedback 6-17-13\Kurt modifications
6-17-13\3p_library_rough_draft_6-17-13.docx"

Older versions of paper
found in this folder
C:\kurt\storage\CIM Research Folder\kwhittem\Papers\My Possible
Papers\3p_library\paper

===========================================================================
I would like to make a figure about selection of lysates from tumor
lysate screens 3-8-13
Slide Image Figure 3-10-13
SMC1fs PC detection figure 3-10-13
RT-PCR of transcripts figure 3-10-13
Table of Transcript Info 3-10-13
Table of categories of features for lysate screen figure 3-28-13
list of pdfs to assemble final pdf of figures
Figure 1
"F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on paper\slide
image figure\Figure 1a.pdf"
"F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on paper\slide
image figure\Figure 1b.pdf"
Figure 2
F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on paper\SMC1fs
PC figure\Figure 2.pdf
Figure 3
F:\kurt\storage\CIM Research Folder\DR\2013\3-9-13\work on paper\figure
for selecting lysate from 3e6 clone\Figure 3a.pdf
F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on
paper\validation from 3e6 screen\Figure 3b.pdf
F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on paper\3000
screen\Figure 3c.pdf
F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on paper\single
clone lysates\Figure 3d.pdf

command to combine all pdfs with pdftk 6-10-13

pdf of All figures found here
"F:\kurt\storage\CIM Research Folder\DR\2013\3-14-13\All Figures.pdf"
^ renamed from below
"F:\kurt\storage\CIM Research Folder\DR\2013\3-14-13\All Figures 6-17-13
Kurt Whittemore.pdf"
"F:\kurt\storage\CIM Research Folder\DR\2013\3-14-13\All Figures 6-10-13
Kurt Whittemore.pdf"
"F:\kurt\storage\CIM Research Folder\DR\2013\3-14-13\All Figures old
2.pdf"
"F:\kurt\storage\CIM Research Folder\DR\2013\3-14-13\All Figures old
1.pdf"

Table
"F:\kurt\storage\CIM Research Folder\DR\2013\3-28-13\table for figure
3\Table 1.docx"
"F:\kurt\storage\CIM Research Folder\DR\2013\3-10-13\work on paper\Table
of transcript info\Table 2.docx"

Message I'd like to send to kathy 3-12-13
Work on paper 3-14-13

Feedback from Kathy 3-27-13

post submission revisions round 1
First proof 7-18-13
Galley proof 8-2-13
-"F:\kurt\storage\CIM Research Folder\DR\2013\8-2-13\Galley proof
8-2-13.txt"
Receipt of payment
-"F:\kurt\storage\CIM Research
Folder\DR\2013\8-9-13\Inv_LB0071548_from_Landes_Bioscience_3016.pdf"

A microarray method for identifying tumor immunogens by screening lysates
from a tumor cDNA library against cancer sera

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