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Process for running a program on saguaro
2015-01-13
++ Process for running a program on saguaro -Make a pbs file which should look something like this: { #!/bin/bash #PBS -l nodes=1:ppn=1 #PBS -j oe #PBS -l mem=6gb #PBS -l walltime=20:50:00 java -jar "/home/lwang138/entropy/input/EntropyOfArray090413_2.jar" home/lwang138/entropy/input/46/110 "4-22 S4 A1 Hi P60 092612 #8-15 5um K" -Xmx6144 } -run the pbs file from the command line by running a command like --qsub /home/lwang138/sas/jar.pbs -check the status of the program by running a command like --watch qstat -n --or like: "qstat" -check the log file by looking at the job id and then finding the corresponding log file --e.g for job id "6107384.newmoab.s59-15" the corresponding file was in the home folder and titled jar.pbs.o06107384 ------------- Process for ending a program on saguaro just "qdel jobid", e.g. qdel 2040020
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