Phage and tumor reading list from Phil 10-24-12

2015-01-13

azim58 - Phage and tumor reading list from Phil 10-24-12

e-mail link:
https://mail.google.com/mail/u/0/?shva=1#inbox/13a95094f2e8f530

Phil specifically mentioned this paper (also found below):
Identifying autoantibody signatures in cancer: a promising challenge.

Adda, C.G., Anders, R.F., Tilley, L., Foley, M., 2002. Random sequence
libraries displayed on phage: identification of biologically important
molecules. Combinatorial Chemistry and High Throughput Screening 5, 1-14.

Random sequence libraries displayed on phage: identification of
biologically important molecules. Combinatorial Chemistry and High
Throughput Screening
(haven't read this yet)

Barbas, C.F., Languino, L.R., Smith, J.W., 1993. High-Affinity
Self-Reacting Human Antibodies by Design and Selection: Targeting the
Integrin Ligand Binding Site. Proceedings of the National Academy of
Sciences USA 90, 10003-10007.

High-Affinity Self-Reacting Human Antibodies by Design and Selection:
Targeting the Integrin Ligand Binding Site.

BouHamdan, M., Xue, Y., Baudat, Y., Hu, B., Sire, J., Pomerantz, R.J.,
Duan, L.-X., 1998. Diversity of HIV-1 Vpr interactions involves usage of
the WXXF motif of host cell proteins. Journal of Biological Chemistry
273, 8009-8016.

Diversity of HIV-1 Vpr interactions involves usage of the WXXF motif of
host cell proteins.

Burritt, J.B., DeLeo, F.R., McDonald, C.L., Prigge, J.R., Dinauer, M.C.,
Nakamura, M., Nauseef, W.M., Jesaitis, A.J., 2001. Phage display epitope
mapping of human neutrophil flavocytochromeb 558. Journal of Biological
Chemistry 276, 2053-2061.
Burton, D.R., Barbas, C.F., Persson, M.A.A., Koenig, S., Chanock, R.M.,
Lerner, R.A., 1991. A Large Array of Human Monoclonal Antibodies to Type
1 Human Immunodeficiency Virus from Combinatorial Libraries of
Asymptomatic Individuals. Proceedings of the National Academy of Sciences
USA 88, 10134-10137.
Çelik, E., Fisher, A.C., Guarino, C., Mansell, T.J., DeLisa, M.P., 1997.
A filamentous phage display system for N-linked glycoproteins. Protein
Science 19, 2006-2013.
Chatterjee, M., Mohapatra, S., Ionan, A., Bawa, G., Ali-Fehmi, R., Wang,
X., Nowak, J., Ye, B., Nahhas, F.A., Lu, K., Witkin, S.S., Fishman, D.,
Munkarah, A., Morris, R., Levin, N.K., Shirley, N.N., Tromp, G., Abrams,
J., Draghici, S., Tainsky, M.A., 2006. Diagnostic markers of ovarian
cancer by high-throughput antigen cloning and detection on arrays. Cancer
Res 66, 1181-1190.
Coley, A.M., Campanale, N.V., Casey, J.L., Hodder, A.N., Crewther, P.E.,
Anders, R.F., Tilley, L.M., Foley, M., 2001. Rapid and precise epitope
mapping of monoclonal antibodies against Plasmodium falciparum AMA1 by
combined phage display of fragments and random peptides. Protein Eng. 14,
691-698.
Cortese, R., Monaci, P., Luzzago, A., Santini, C., Bartoli, F., Cortese,
I., Fortugno, P., Galfrè, G., Nicosia, A., Felici, F., 1996. Selection
of biologically active peptides by phage display of random peptide
libraries. Current Opinion in Biotechnology 7, 616-621.
Desmetz, C., Maudelonde, T., Mange, A., Solassol, J., 2009. Identifying
autoantibody signatures in cancer: a promising challenge. Expert Reviews
in Proteomics 6.

Identifying autoantibody signatures in cancer: a promising challenge.
(haven't read this yet)

Ferrer, M., Sullivan, B.J., Godbout, K.L., Burke, E., Stump, H.S., Godoy,
J., Golden, A., Profy, A.T., Van Schravendijk, M.R., 1999. Structural and
functional characterization of an epitope in the conserved C-terminal
region of HIV-1 gp120. The Journal of Peptide Research 54, 32-42.
Jespers, L.S., Roberts, A., Mahler, S.M., Winter, G., Hoogenboom, H.R.,
1994. Guiding the selection of human antibodies from phage display
repertoires to a single epitope of an antigen. Nature Biotechnology 12,
899-903.
Marks, J.D., Ouwehand, W.H., Bye, J.M., Finnern, R., Gorick, B.D., Voak,
D., Thorpe, S.J., Hughes-Jones, N.C., Winter, G., 1993. Human Antibody
Fragments Specific for Human Blood Group Antigens From a Phage Display
Library. Biotechnology 11, 1145-1149.
McAfferty, J., Griffiths, A.D., Winter, G., Chiswell, D.J., 1990. Phage
Antibodies: Filamentous Phage Displaying Antibody Variable Domains.
Nature 348, 552-554.
Mintz, P.J., Kim, J., Do, K.-A., Wang, X., Zinner, R.G., Cristofanilli,
M., Arap, M.A., Hong, W.K., Troncoso, P., Logothetis, C.J., Pasqualini,
R., Arap, W., 2003. Fingerprinting the circulating repertoire of
antibodies from cancer patients. Nat Biotech 21, 57-63.
Oyama, T., Sykes, K.F., Samli, K.N., Minna, J.D., Johnston, S.A., Brown,
K.C., 2003. Isolation of lung tumor specific peptides from a random
peptide library: generation of diagnostic and cell-targeting reagents.
Cancer Letters 202, 219-230.
Pasqualini, R., Ruosiahti, E., 1996. Organ Targeting in vivo Using Phage
Display Peptide Libraries. Nature 380, 364-366.
Petrenko, V.A., Vodyanoy, V.J., 2003. Phage display for detection of
biological threat agents. Journal of Microbiological Methods 53, 253-262.
Rader, C., Barbas, C.F., 1997. Phage display of combinatorial antibody
libraries. Current Opinion in Biotechnology 8, 503-508.
Sidhu, S.S., Fairbrother, W.J., Deshayes, K., 2003. Exploring
protein–protein interactions with phage display. ChemBioChem 4, 14-25.
Smith, G.P., Petrenko, V.A., 1997. Phage display. Chemical Reviews 97,
391-410.

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