Human SMC1a sequence information 01-03-2014d0917

2015-01-13

Raw Human SMC1a RNA
"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2013\6-14-13\SMC1fs\raw sequences\Human SMC1 mRNA.txt"

annotated human smc1a wt sequence (open with ape)
-"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2014\01-03-2014d1534\smc1 sequence\human smc1a wt mRNA sequence 01-03-2014d0937.str"
--some smc1a wt exon data 01-03-2014d1535
---C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2014\01-03-2014d1534\smc1 sequence

Raw Human SMC1afs RNA
"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2013\6-14-13\SMC1fs\raw sequences\human smc1 FS mRNA.txt"

annotated human sm1afs sequence (open with ape)
-"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2014\01-03-2014d1534\smc1 sequence\human smc1afs mRNA sequence 01-03-2014d1007.str"

mRNA sequence of human smc1afs from start codon to stop codon
atggggttcctgaaactgattgagattgagaactttaagtcgtacaagggtcgacagattatcggaccatttcagaggttcaccgccatcattggacccaatggctctgggtgctgtggaatctattgccatgaagaaccccaaagagaggacagctctatttga

nucleotide sequence of 20 bp before and 41 bp after the fusion site of exon 1 to exon 4
cattggacccaatggctctgggtgctgtggaatctattgccatgaagaaccccaaagagag

Protein sequence of human smc1afs from start codon to stop codon
TAIIGPNGSGCCGIYCHEEPQREDSSI
-[Blast of SMC1afs protein sequence 06-25-2014d1053]
--See also [MAST of SMC1afs epitopes from random peptide array 06-25-2014d1441]
-Protein sequence of human smc1afs with 10000 random aa
--"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2014\08-10-2014d1459\smc1_w_10k_ran_aa.txt"

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