GenomeSpace portal 11-13-2014d1029

2015-01-13

GenomeSpace portal 11-13-2014d1029
Genome Space portal
Frictionless connection of bioinformatics tools

paper on the platform
-Michael M. Reich, John Liefeld, Marco Ocana, Donkeung Jang, James Robinson, Peter Carr, Barbara Hill, Thorin Tabor, Helga Thorvaldsdottir, Aviv Regev, Jill P. Mesirov. GenomeSpace: An environment for frictionless bioinformatics. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr 5331. doi:10.1158/1538-7445.AM2014-5331

some ways that you can analyze data with genomespace (recipes)
-http://www.genomespace.org/support/guides/recipes
-Find subnetworks of differentially expressed genes and identify biological functions
-Find differentially expressed genes in RNA-Seq data
-Preprocess and quality check RNA-Seq data
-Identify and visualize expressed transcripts in RNA-Seq data
-Identify and annotate coding variants from whole exome sequencing (WES) data (summary only)
-Identify biological functions for genes in copy number variation (CNV) regions
-Identify an up- or down-regulated pathway from expression data

It looks like there are some nice videos and presentations
-http://www.genomespace.org/presentations-and-videos

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See also
-[pr_GenomeSpace account info 11-12-2014d1552]

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