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Clustal Omega
2015-01-13
azim58 - Clustal Omega clustalo Clustal Omega is a sequence alignment program (very good alignment software; can't automatically figure out whether a sequence should be forward or reverse though) found here http://www.ebi.ac.uk/Tools/msa/clustalo/ Clustal Omega can be used to investigate a contig assembly as long as all of the sequences are listed in the correct orientation (5'->3') Comparison of Sequencher and Clustal Omega Clustal Omega Command Line Program { Examples of use from command line clustalo -i fasta_input.fa --outfmt=clustal -o clustalo_output.txt clustalo -i fasta_input.fa --outfmt=vienna -o clustalo_output.txt } Clustal Omega can be installed on Ubuntu simply by typing "sudo apt-get install clustalo" Question about clustal omega and orientation -[question about scoring a multiple sequence alignment 7-21-14]
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