108 SMC1fs peptides

2014-09-06

azim58 - 108 SMC1fs peptides
smcfs peptides
smc peptides

top 100 smcfs peptides (it's actually 108 peptides)

The list of 108 peptides can be found here:
"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2012\6-5-12\list of 108 peptides.txt"
The list of 108 peptides without GSC
"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2012\6-5-12\list of 108 peptides sans GSC.txt"
The list of 108 peptides without GSC or peptides with more than 3 tryptophans
"C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2012\6-5-12\list of smcfs peptides sans GSC sans peptides with more than three tryptophan.txt"
The list of 108 peptides with their intensities in the blocking
experiment and an SMC1fs specific score can be found here
"C:\kurt\storage\CIM Research Folder\DR\2012\6-5-12\list of 108 peptides
with intensities in blocking experiment.xlsx"
"C:\kurt\storage\CIM Research Folder\DR\2012\6-5-12\code to get list of
108 peptides with intensities in blocking experiment.txt"

What happens when you submit all 108 SMC1fs peptides to glam2 to find a motif?
-the PQRE motif is certainly not identified
-results here: "C:\Users\kurtw_000\Documents\kurt\storage\CIM Research Folder\DR\2014\07-02-2014d0933\glam2 smcfs peptides\GLAM2 smcfs peptides 07-02-2014d1554.html"

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